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3D Slicer EM Segmentation with Atlas

Supported Platforms

Linux, Mac OSX, Windows

Supported Data Formats

Analyze (.hdr), Analyze (.img.gz), Analyze (.img), BioRad, BioRad (.pic), BMP (.bmp, .BMP), Brains2 (.mask), DICOM, Fiducial List CSV (.fcsv), GIPL (.gipl, .gipl.gz), JPEG (.jpg, .jpeg, .JPG, .JPEG), LSM, MetaImage (.mha), MetaImage (.mhd), NifTI (.nia), NifTI (.nii, .nii.gz), NRRD (.nhdr), NRRD (.nrrd), PNG (.png, .PNG), Poly Data (.vtk), Stimulate (.spr), STL solid model triangulated geometry files (.stl), Text (.txt), TIFF (.tiff, .tif, .TIFF, .TIF), Transform (.tfm), VTK (.vtk), XML Poly Data (.vtp)

Resource Description

This is a 3D Slicer module for atlas-based Expectation-Maximization segmentation of volume data.

Tags

Atlas, NA-MIC, Segmentation, Volume Segmentation