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Segger

Supported Platforms

Linux, Mac OSX, Windows

Supported Data Formats

Aligned FASTA, Aligned NBRF/PIR, Amira mesh, scalar, APBS potential, Bild, Brix format electron density map reader (.brix), BRIX or DSN6 density map, CASTp ID fetch, CASTp local, CATH, CCP4 density map, Chimera commands, Chimera demo, Chimera map, Chimera markers, Chimera web data, CIF/mmCIF, CIFID, Clustal ALN, CNS or XPLOR density map, COLLADA, DelPhi or GRASP potential, DOCK scoring grid, EDSDIFFID, EDSID, EMAN HDF map, EMDBID, formatted checkpoint, Gaussian, Gaussian "cube" file reader (.cube), GCG RSF, gOpenMol grid, GRASP surface file reader (.grasp, .srf), Gromos 87, Gromacs structure file (.gro), HDF5, HSSP, Image stack, IMAGIC density map, IMOD map, IMOD segmentation, MacMolPlt grid, Maestro file, MD Movie metafile, MDL MOL/SDF, ModBase, Mol2, MRC, MRC density map, MS surface, MSF, NDB, NetCDF generic array, Neuron trace, PDB, PDB biounit, PDBID, PQR (coordinate, charge, and radii) (.pqr), PQSID, Priism microscope image, Priism time series, PubChem CID, Python, Rich Molecular Format, SCOP, Segger segmentation, Selex, Situs map file, SMILES, SPIDER volumetric images (.spi, .spider), SQT, Stockholm, TOM toolbox EM density map, UHBD grid, binary, UniProt accession or ID, VIPERdb, VIPERID, VRML, VTF structure files (.vsf, .vcf), VTF trajectory files (.vtf), VTK (.vtk), XYZ coordinate files (.xyz)

Resource Description

Volume segmentation tool targeted at Cryo-EM density maps. This is a plugin for Chimera.

Tags

Chimera, Cryo-EM, Volume Segmentation