Collaboration Through Dissemination
Supported PlatformsLinux, Mac OSX, Windows
Supported Data FormatsAMBER, AMBER 'binpos' trajectory reader (.binpos), AMBER "CRD" trajectory reader (.crd, .crdbox), AMBER 4-6 structure file(.parm), AMBER 7-9 restart file(.rst7), AMBER 7-9 structure file(.prmtop, .parm7), AMBER NetCDF trajectory reader (.nc), CHARMM, CHARMM coordinate file (.crd), CHARMM, CNS, NAMD, X-PLOR PSF structure file (.psf), CHARMM, NAMD, X-PLOR "DCD" reader/writer (.dcd), CNS or XPLOR density map, X-PLOR, CNS format electron density map reader (.cns, .edm, .xplor)
NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. Based on Charm++ parallel objects, NAMD scales to hundreds of cores for typical simulations and beyond 200,000 cores for the largest simulations.